rs49518554 SNP Detail

Summary

• ID
  rs49518554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29895340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC TGGGAGCTCA CCTGGTTCCC
  Y
  TAGCTCGTTT ACTCTTGCTC ATCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991865	NES16142289	PERLEGEN	MM_PANEL2	f	SNP	T			T	C		T	T		C	T	T	C		C
ss148668767	ENSMUSSNP4142107	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
ss322132214	CHEV_7_30980934	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49518554					SNP	T	T	C	T	C	C	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991865	NES16142289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29895340 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18782	CpG island 18782	1874 bp distal
Cpgi18783	CpG island 18783	599 bp distal
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	722 bp upstream
Rr400233	regulatory region 400233	579 bp downstream
Tssr65662	transcription start site region 65662	1958 bp downstream
Tssr71703	transcription start site region 71703	1882 bp upstream
Tssr71704	transcription start site region 71704	1775 bp upstream
Tssr71705	transcription start site region 71705	1753 bp upstream
Tssr71706	transcription start site region 71706	884 bp upstream
Tssr71707	transcription start site region 71707	872 bp upstream
Tssr71708	transcription start site region 71708	825 bp upstream
Tssr71709	transcription start site region 71709	690 bp upstream
Tssr71710	transcription start site region 71710	346 bp upstream