rs49518689 SNP Detail

Summary

• ID
  rs49518689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153424260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT CTAAGAGTCA AGGAATTGCT
  R
  TGCATCTGAA GACCAGCATC TGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60820875	NES16434143	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49518689					SNP	A	A	A	A	A	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60820875	NES16434143	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153424260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	971 bp proximal
F630010C12Rik	RIKEN cDNA F630010C12 gene	within coordinates
Npl	N-acetylneuraminate pyruvate lyase	within coordinates
Rr372265	regulatory region 372265	1726 bp downstream
Rr420696	regulatory region 420696	538 bp distal
Rr420697	regulatory region 420697	928 bp proximal
Rr420698	regulatory region 420698	1521 bp proximal
Tssr14276	transcription start site region 14276	1183 bp downstream
Tssr14277	transcription start site region 14277	1220 bp downstream
Tssr14278	transcription start site region 14278	1304 bp downstream
Tssr14279	transcription start site region 14279	1324 bp downstream
Tssr14280	transcription start site region 14280	1531 bp downstream