rs49519898 SNP Detail

Summary

• ID
  rs49519898
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66902738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACT CACTGTAAAG GATTGTGCTG
  T
  TTTGGTTTGG GTTTTTTGTT TGTTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144520368	ENSMUSSNP5051325	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss319758743	CHEV_1_66910153	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49519898					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66902738 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	302 bp upstream
Cpgi339	CpG island 339	within coordinates
Rr412477	regulatory region 412477	1450 bp distal
Rr412478	regulatory region 412478	313 bp distal
Rr412479	regulatory region 412479	within coordinates
Tssr12011	transcription start site region 12011	320 bp upstream
Tssr12012	transcription start site region 12012	294 bp upstream
Tssr12013	transcription start site region 12013	282 bp upstream
Tssr12014	transcription start site region 12014	264 bp upstream
Tssr12015	transcription start site region 12015	244 bp upstream
Tssr12016	transcription start site region 12016	229 bp upstream