rs49520078 SNP Detail

Summary

• ID
  rs49520078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121615348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCAAGGTT ATCCTCTGAC CTCCACATGT ACCCAAGGTT
  ATCCTCCGAC CTCCACATAC GTGCCATGGC AAGCAAATGT TCTCACACAC ATACACACAC
  R
  TAAAGACTTT TTAAAGGATG TAGAAGAAGC ACACCTGGGG AGGTGGCCCA TGCCTATGGT
  TCCAGCCACT CCATGAGATG AGGCAACAGA AGAGCTGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135729816	ENSMUSSNP185174	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320906091	CHEV_3_121524617	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49520078					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121615348 () rs orientation: forward

Symbol	Name	Function Class
D3Mit347	DNA Segment, Chr 3 Massachusetts Institute of Technology 347	1366 bp proximal
Gm42776	predicted gene 42776	1745 bp downstream
Rr584177	regulatory region 584177	882 bp distal
Rr584178	regulatory region 584178	36 bp proximal