rs49520315 SNP Detail

Summary

• ID
  rs49520315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127432354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCTCTACT CACCTATGCT AGGGAACCTC CAGAGAGCAG
  CGTGATGATT CCCCCGAAGT CTGCCTTGGT GAATCCATGA GTTTTGTTGG GTTGTTTGCA
  R
  GAGTATGGGT AGCATGGAAG GACCAGCAAG GACGGCAGGG GGTGCAGGTG ACATCAAGGG
  ACTTTCACGA GGCTTGGAAA CTGCATGGGT TTGAGGGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535471	ENSMUSSNP6910460	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49520315					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127432354 () rs orientation: forward

Symbol	Name	Function Class
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564567	regulatory region 564567	1841 bp distal
Rr564568	regulatory region 564568	within coordinates
Tssr20027	transcription start site region 20027	65 bp downstream
Tssr20028	transcription start site region 20028	308 bp upstream