rs49520956 SNP Detail

Summary

• ID
  rs49520956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32904178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAG GGAGGGGTGT
  GGGTAAGGAG CCAATCTGGA AGGAATTAAG CGGGAGAGTA GGAGGCAAGT CTGATCAAAA
  CACATTTTAT GCATAAAATT CTCAACAACA AATTAATAAA ATATTGTGTA TTTAAAAAAA
  AAAAAAGGTA CATGCTGTGA GTGCAGTCCA GTGCAGAGGA CTTTGGGAGA TGGTCTGTGA
  Y
  CAAGCCTGGC CTGGTTGCAT TCTCCTAGCA GGAGAATTCC TGTTAATGAT TTTGCTAGAT
  ACACTGTCGT CTCTGACGAG TCTCTGACGC GTAGGGATAC CCCTACTTGG CTGTGGATGT
  TAGACTCAGA CTTACCTCTG CTAACCTCAG AGTTTTGCTC CCAAATCTCT CCTGCCCTCA
  ACCTCCATCC CCATGCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss62679302	NES17312492	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs49520956					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679302	NES17312492	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32904178 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f15	cytochrome P450, family 4, subfamily f, polypeptide 15	427 bp upstream
Rr339615	regulatory region 339615	422 bp proximal
Tssr143733	transcription start site region 143733	381 bp upstream
Tssr143734	transcription start site region 143734	406 bp upstream
Tssr143735	transcription start site region 143735	435 bp upstream
Tssr143736	transcription start site region 143736	451 bp upstream
Tssr143737	transcription start site region 143737	889 bp upstream