rs49522535 SNP Detail

Summary

• ID
  rs49522535
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122529451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCAGGTG CCCAGAGCAA
  GCGCGGCTGG TAATTCAGAG CGGCCACGAA TAGGAGAAGA GTAGATTTGG CAAGCCGGAC
  TGTGGCAGCT GCTGTGTACT TACTTATGGT TTTAAATAGT GCTCACAGGG GGGTTTCACG
  GGCCATACTT GAAGCCCTGT CTCTGCCCCT CCTGCCTCAA GGCATGAGGT GAATACTGGC
  W
  CAGGCCACCT GGGCTGTGAC AGTCCTTTTG TACCTTGTGC CCTCCTGAAG CCTGCCTTGC
  TCCTTGCATC CCACTATGGC TTCCCATCCT GGGGGCCTCT AAGTCCTGAG TGCTACCTTC
  TCATCCATGA GACGAAATGC TCAAGATAGG TGCTCGTGTA AGGGAACACA TTTTATGCAG
  CTCACAGCTT TAGAAACCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss52249006	NES15337119	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs49522535					SNP	T	T	T	T	T	T	T	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52249006	NES15337119	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122529451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2304	CpG island 2304	within coordinates
Ppm1h	protein phosphatase 1H (PP2C domain containing)	within coordinates
Rr213323	regulatory region 213323	1550 bp proximal
Rr226290	regulatory region 226290	within coordinates