rs49523345 SNP Detail

Summary

• ID
  rs49523345
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88204428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AACACGTGCC CTGAACAGCC AATAAGACAA AAGACAGACT
  GCACTTGTAG ACCCCTGGCA GACTGTGATC CGAAATCCGA TTTTATCAAT AAATTCAGAC
  A
  AACATCAGGG ATGGGTCTTA GGGAAGGATA CGACCTCATC AAATAACAAA CTTATCCCAG
  TTAGAGAACC GATGAGGTTT AAGGTAGTAA GTACACTCAC A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144900211	ENSMUSSNP456780	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49523345					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88204428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	174 bp proximal
Cpgi541	CpG island 541	1441 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr29783	regulatory region 29783	within coordinates
Tssr12873	transcription start site region 12873	558 bp downstream
Tssr12874	transcription start site region 12874	764 bp downstream
Tssr12875	transcription start site region 12875	804 bp downstream