rs49523557 SNP Detail

Summary

• ID
  rs49523557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185321320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACAACAG AATTAAAAAC
  CCAAAGTAGA CATGATAAAG AGTCGAGTGA GGTTCCTTTA AATAGTATAG ACAAGGGAGA
  GCCCCTTCTA TGAGGAGGTA TGTTTGATTG ACAGGGAGGA GCCCCTCTTG CAGCTAGCTA
  TGGGCATTCC AGGTAGACTA GTCATGAGGA CACTTGTGAG GGACAAGTGA GACAGACACA
  Y
  GGGAAGAGAG CAGGACAGCA GGATGCACAA GGGTGGAGAT AAGTGGTTAT CTTTATTTAT
  TTATTTTTAA CTTCTTATTG ATTCCTTGTA AGTTTCAAAT CATGTACCCC AATCTCACTC
  ATCTTCCCAT CCCCTCATAT TCACATTCAC CCCTTCTGCC CTTGCAAAAT AACACACACA
  CACACACACA CACACACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146437054	ENSMUSSNP5858456	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320177578	CHEV_1_187413002	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49523557					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185321320 () rs orientation: forward

Symbol	Name	Function Class
Rr425415	regulatory region 425415	406 bp distal