rs49523693 SNP Detail

Summary

• ID
  rs49523693
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:40529157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTAATGT CCTCAAGGTC
  ACATGGCTCC ACACAACTTT TTATTCTGGT TGAATAAGAA TTCTGGCTGG TGCTCACTTC
  AGCAGCACAT ATACCAAAAA AAAAAAAAAA AAAAAGAAAG AAAAAGAAAA AAATTGGAAA
  TATAGAAGAT TAGCATGGCC CCTGCACAAG GATGATACAC AAATTTGTGA AGTGTTTCAT
  A
  TTTTTTTTTT AAAAAAAAAG AAGAATTCTG GCTGAATTCA GAGAAGTTAC AGGAGCTCGG
  CATGGCAGGA TACTAGAGAA ACTACAACAG GAGGAGAATA ACTTCTAGGC CAGCATTGAC
  TGTGGTGAAT TCAATGCCAG CCTGGGAGCT ATAGTGAGAC TCTGAGCCAG GGGTTTAGCT
  CAGCAGCAGA GCATTTGCTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149000146	ENSMUSSNP626368	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49523693					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:40529157 () rs orientation: forward

Symbol	Name	Function Class
A230077H06Rik	RIKEN cDNA A230077H06 gene	within coordinates
Gm25784	predicted gene, 25784	within coordinates
Gm28307	predicted gene 28307	within coordinates