rs49523820 SNP Detail

Summary

• ID
  rs49523820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:79767845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTTCCTCTCC CCCTGGTGCT CTGCTGATAA AAACATGAGT
  GACGTCTCAC TAGTAAAGAT AGAGGGAGGG GCAGGAGGAG CCTGGGCCTC TCATGTTCTC
  Y
  TTGCTGCTTA TTGGCTGTGT CCTTAGGCAG GTCACATTGC TTATGGTCCC AAATTCCTTA
  CCTTTTCAAT GAAGTGTGTA GTTCTCAGCT ATTCCTAGGT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss139813551	ENSMUSSNP5719004	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49523820					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79767845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elf1	E74 like ETS transcription factor 1			Intron
				Noncoding-Transcript-Variant
Gm9243	predicted gene 9243			505 bp downstream
Rr496131	regulatory region 496131			within coordinates
Rr496132	regulatory region 496132			678 bp distal
Rr496133	regulatory region 496133			1645 bp proximal
Tssr126802	transcription start site region 126802			268 bp upstream
Tssr126803	transcription start site region 126803			287 bp upstream