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rs49525836 SNP Detail
Summary
  • ID
    rs49525836
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr10:76847719 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCACAATTT CATTGCATGT
    AAGAAAGCAC ATAGCCAGCC CAGCTCAGCA CTGGGCTATA GACCTGGCTC TGCTGCTGAA
    GGTGTTTCTA GGTGCCTCAG CCTCCCTACT CATGCTATTC TTAGCATCTT CTTTAGAAGA
    AAATGTCTCA GCACGAGCAC ACTCCAAGTA GGGCTTGGCA CTCACCCCTA GAGGACACAG
    R
    CTCGTGAACC CTGCCTGTTT TCTCTCTTAC ACTTTAACTC ACCTATTACC TTGGCACGGA
    CTCTGCTCTT GCATGGATTA TATAATCTGG AAACGGTCTG TATGGCTCAT CATCACCCCA
    GTGTTGGCCT CTGGTGTCTC CTTAACAGTT TCCATGCCTC CCTCAGTATT GCCCATCAGA
    GTAATGCTCA CTGTCTGTTC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss52376402 NES15271940 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs49525836 SNP G G G G G G G G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52376402 NES15271940 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:76847719 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm3137 predicted gene, 3137 within coordinates
Gm10787 predicted gene 10787 110 bp upstream
Rr434365 regulatory region 434365 414 bp proximal
Tssr94202 transcription start site region 94202 99 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory