rs49526651 SNP Detail

Summary

• ID
  rs49526651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97796117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGCGTG GTGAGCCCAG
  CACGGCGGCG GCGCGTGGTG GCAGATGGAC CCGCTGTCCG TGCGCTTCAT GGTTCCGAGG
  CCTGGGCACT GTGCCCTTGC TATGATCTCT GCGTGGTTTC TTTTGGTTTC ACCGGCTGCC
  CAGGCGCATC CTCCCAGCGT GGAAGAGCAT CCAACCCAGA TGCTGCGGCT GTGGCTGAGA
  Y
  GCGGCCAGGT TCTGCCTCCC GCGAGGCTGT CTGCCAACTG CTCCGCCCAG GCGCTTTTGG
  TCCTTCTGCT ACACACGTAG CTGCCCTGCA TCCTCTAGCA TCTCCGCTTC GTTCTCCATC
  TGTGACCTCA GCCTGGCACT ATTGTCATTT CCAGACCTCA CTACTGCCTT TTCGTTCTGT
  GCATTCCAAT GTCACCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	WSB/EiJ
ss60427116	NES15930608	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	WSB/EiJ
rs49526651					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60427116	NES15930608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97796117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	within coordinates
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	94 bp upstream
Rr581573	regulatory region 581573	within coordinates
Tssr34685	transcription start site region 34685	154 bp upstream
Tssr34686	transcription start site region 34686	within coordinates
Tssr34687	transcription start site region 34687	26 bp downstream
Tssr34688	transcription start site region 34688	110 bp downstream