rs49526767 SNP Detail

Summary

• ID
  rs49526767
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33880739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCCACG GTCCGCTCTG
  CGTCCCTTGG TTGCCCGGAG GTGCGACGCG CGCGGCCCCC GGCTGTGCCC GGTGGCAGCG
  TGGCAAAGCA GAGCAGCGGT CTGGCGGGAG GCCGCGCGAA GGGAGGCTTT CGCTCGGTAA
  GTTGTCGCCC CACCCGAGCT GAGGCCCGAA CAGCCGCTCC TTTGTACCTC GGCGGCCACA
  R
  ACCGCGCATT GATGGCGGCG CGGCCTCTCG GGGAGGTGCG AGTGCGGCGG GCGCAGCGGG
  AGGAGGCAGA TGGCGGTGTG CCCCTCCCGG CGCCCCCGCG CCCCTCTCTC CAGCGGCTGC
  AGCCTCCTGG AACAATGTCA TTTTCTTTCT TTCTTTCTTT CTTTCTTTTT TTTTATGAAT
  GAAAGTGGGC CGGGAACTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61135455	NES16645774	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49526767					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61135455	NES16645774	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33880739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15741	CpG island 15741	within coordinates
Fgfr3	fibroblast growth factor receptor 3	within coordinates
G630022F23Rik	RIKEN cDNA G630022F23 gene	within coordinates
Rr366768	regulatory region 366768	986 bp downstream
Rr407322	regulatory region 407322	1086 bp distal
Rr609611	regulatory region 609611	1587 bp distal
Rr609612	regulatory region 609612	1079 bp distal
Rr609613	regulatory region 609613	within coordinates
Rr609614	regulatory region 609614	1373 bp proximal
Tssr45830	transcription start site region 45830	1595 bp downstream