rs49527984 SNP Detail

Summary

• ID
  rs49527984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172344451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAA ATCAGAAATC TTCTAAATTC
  R
  ACTTGCCTGA TTGGCATCTC AAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011720	PARCsnp_1.19938	PARC_SEQ	INBRED	f	SNP		A	G
ss120014617	PARCsnp_1.09986	PARC_SEQ	INBRED	f	SNP		A	G
ss146194107	ENSMUSSNP2058202	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320125820	CHEV_1_174447015	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs49527984					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172344451 () rs orientation: forward

Symbol	Name	Function Class
Gm70635	predicted gene, 70635	within coordinates
Rr372460	regulatory region 372460	1196 bp upstream
Rr423606	regulatory region 423606	842 bp distal
Rr423607	regulatory region 423607	1321 bp proximal