rs49528018 SNP Detail

Summary

• ID
  rs49528018
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32687362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG TAGGCCACAG GCTATATCAT
  G
  GCAGAAATAT TTTCACCCAG ACACT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147954621	ENSMUSSNP6425333	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss325137904	CHEV_16_32867078	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49528018					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32687362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	894 bp proximal
Rr325218	regulatory region 325218	within coordinates
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140826	transcription start site region 140826	631 bp upstream
Tssr140827	transcription start site region 140827	518 bp downstream
Tssr140828	transcription start site region 140828	1279 bp downstream
Tssr140829	transcription start site region 140829	1294 bp downstream
Tssr140830	transcription start site region 140830	1333 bp downstream