rs49528586 SNP Detail

Summary

• ID
  rs49528586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37875186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAGGTG TATAAAAGGT
  GGAGAGAACT GTGTACCAGA TAGAGAGAGA AGGCTGCAAT CCTTTTATAC CCATGATTCC
  AAACAGCAGC ACAACTGAGA AGTGAGGCTT GGGACTGTTG CCCTGTAGGG AGGGGAGGCA
  ATAAAAGCCT CCCCTGGGCT GTAGGGTAGA TGGTCTGAGC AAGCGACCCA GAATGGTGTC
  R
  CTGCACCCTC TCGCCACTGC TCTAACCCAC ATGTTATACC CATGATACCT CCCTTCCCTT
  CCTAGAGAAT CCTACCAGGA GCCCTCCACA CACTTGGCTA ATCATGTACT AGTAAGGGGC
  TCATCAATGC TCCTTAAGAA AGAGAGACTG AGAGATCAAA ATTCATCCCA TCCATTCCAT
  TATTAATTTG TTTGATTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61764384	NES17699221	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49528586					SNP	G	G	G	G	A	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61764384	NES17699221	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37875186 () rs orientation: forward

Symbol	Name	Function Class
Rr275856	regulatory region 275856	1214 bp proximal
Rr279067	regulatory region 279067	1397 bp distal
Rr279068	regulatory region 279068	1917 bp proximal
Rr283303	regulatory region 283303	386 bp distal