rs49528595 SNP Detail

Summary

• ID
  rs49528595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68914130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGGGCATA TGTACATGAG
  TGCAGGTGCC CCTGGAGGGC ATGAACCTCG AGCATCCCAT TGTGGGTGCT GAAAACCAAA
  CTTGGGTTCT ACACAAGAAA AAAATTGCTG GGCCCCCTAG ATTGCCTTTA AAGAGAAGGT
  ATAATTGAGA GCGTAGAGCA GGCGGAGGGT AGAAATTAAG AGCTACTGTG AAATTCCTGT
  S
  ACCATGTTAC TGAAGTTTGT GAGTTTCTTA AGCTGAGCCA TGTGGAGAGT TGGATTTTCG
  ATTGTTAGGG TTGCATCTCC TGCATCAGGG AATCCGTTTG TTGCAAGGTT TTCTTTATGG
  TATATTGAGT ATTTTGACTC CTCTAAGTAC AATGTGTATA CCACACATTT TGTGACTGGT
  CTGATTGCTT TCACGAATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135264514	ENSMUSSNP4912053	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49528595					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68914130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	310 bp distal
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29507	transcription start site region 29507	1776 bp downstream
Tssr29508	transcription start site region 29508	1655 bp downstream
Tssr29509	transcription start site region 29509	1484 bp downstream
Tssr29510	transcription start site region 29510	1443 bp downstream
Tssr29511	transcription start site region 29511	1312 bp downstream
Tssr29512	transcription start site region 29512	1055 bp downstream
Tssr29513	transcription start site region 29513	851 bp downstream
Tssr29514	transcription start site region 29514	725 bp downstream
Tssr33522	transcription start site region 33522	368 bp upstream