rs49529271 SNP Detail

Summary

• ID
  rs49529271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31469248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCGGAGCTGT CACCGGATCC AGACTGTTTT CTATTCCTAC
  TACCACTGAG ACAAACCACG GTAGTGGCAC ACTGCCTCCA TCCCTCTCCC TCAGCTAGCC
  R
  GTGACCACCC CACCCCCATC TCATGCAGAC ATTTTAGACT CTGTACATCA AACCCTACAA
  GTACTAGTCC CTGCTTAGAA CCATAAATCC TTGCCACGGC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147445971	ENSMUSSNP4820810	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49529271					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31469248 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	1181 bp upstream
Tssr133931	transcription start site region 133931	1150 bp upstream
Tssr133932	transcription start site region 133932	1122 bp upstream