rs49529768 SNP Detail

Summary

• ID
  rs49529768
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31092477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAATCCCAT GGAGGCATCT CCTCAGCTGA GGCTCCTTCC
  TCTCTGATGA CTCTAGCATG CATCAAGTTG ACACACAAAA CCAGCCAGTA AGGTGACACC
  G
  TTCTACCTGC CCTTGTATCT TCTCACTGTG ACTCTTGAGG CCCTTAAATT GCCAGGGCTG
  TAGAAGAGGT CACATTTGGC CGTAGGATGT TTCCTGGTG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145451147	ENSMUSSNP2284965	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss325357666	CHEV_17_31010448	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49529768					SNP	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss159831599	UOL_MMUSEQ_160	UOL_CGR	Mmu17_30637692_36837814	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31092477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8937	CpG island 8937	990 bp proximal
Dnah8	dynein, axonemal, heavy chain 8	within coordinates
Gm9937	predicted gene 9937	358 bp downstream
Gm50252	predicted gene, 50252	within coordinates
Rr330583	regulatory region 330583	724 bp proximal
Rr341199	regulatory region 341199	1077 bp distal
Rr341200	regulatory region 341200	725 bp proximal
Tssr147267	transcription start site region 147267	1528 bp downstream