rs49530971 SNP Detail

Summary

• ID
  rs49530971
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179988666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGCTGGCT TCCCTTGTGC CCAGTCCAGG
  CTAGAATCCG GACTGTGCTT TCTTTATGAA AACCATCCTG GCCATCAGCC ACCGAGCCTC
  CCCACAGGTC TTGCACAGAA GGCCGAGGGT ACTGTGCAGA GGAAGACCCA GTTCTGGTTC
  W
  GCATGGGGCT CAGCTGTCCT GGCCCTTTAG GTCTGAATTG TTCTACAGAC TTCCTGTTCT
  CACCCCTTCT CTCTGCAGTG AGAGGAGATG GTGGGCCCTA CTCCATGGTC AGCCTGGGTA
  ACTCTACACA AAGGGACAGC TCTGGCCATG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148390595	ENSMUSSNP2588960	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss320631886	CHEV_2_180081578	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49530971					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179988666 () rs orientation: forward

Symbol	Name	Function Class
Gm52543	predicted gene, 52543	382 bp upstream
Gm75553	predicted gene, 75553	within coordinates
Rr572721	regulatory region 572721	within coordinates
Rr572722	regulatory region 572722	431 bp proximal