rs49531951 SNP Detail

Summary

• ID
  rs49531951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38355476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTCTACA GGGCTGAGTT
  CTTGTACTCC TTCCTTTATA CCATGATGCT TAGAATACTG AATCTCTACC CATCCATTGT
  CTAGTCTGCA TGCTTGAGTA GGGCTCTGCA CTGGGTCTGA AAAACCCTAA AGGGTGAGAG
  TCTAACAAAG TCTAGGATAA ATGGGTGCCT AGAGCTTGAA TTTGTTGGTC CCTCGAGGGT
  Y
  CACAGTGATG CACAAAGCCC TTTTAGAGCA GGTTACAGTT TGGGGTGAGA AGGGTTAAAG
  GCTGAGAATT GGGGTTAGAT CTTTGTGCTC TGCCACACCC ACCAAAGAAT TCCAATATTT
  CTAAATTGGG GCCCAAACTT TTACATTTTG TTGTATTTGT CAGGTAGAAT GATAAAACTT
  TTTTTAAAGA ACTTTAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133127229	ENSMUSSNP1338863	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49531951					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38355476 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	1266 bp distal
Rpl30-ps1	ribosomal protein L30, pseudogene 1	1387 bp downstream
Rr135132	regulatory region 135132	525 bp proximal
Rr146156	regulatory region 146156	1475 bp distal
Rr146157	regulatory region 146157	1924 bp proximal
Tssr55644	transcription start site region 55644	1803 bp downstream