rs49532042 SNP Detail

Summary

• ID
  rs49532042
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103270257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAT TATCAGACGT CTGAGTATCC
  W
  CAAACAGGTC TCACAAAACA CTGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss62546577	NES17293633	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs49532042					SNP	T	T	T	T	T	T	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62546577	NES17293633	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103270257 () rs orientation: forward

Symbol	Name	Function Class
4933432I03Rik	RIKEN cDNA 4933432I03 gene	within coordinates
Rr404263	regulatory region 404263	591 bp upstream
Rr404264	regulatory region 404264	1310 bp upstream
Rr496958	regulatory region 496958	318 bp proximal
Rr496959	regulatory region 496959	691 bp proximal
Rr496960	regulatory region 496960	1354 bp proximal
Tssr4511	transcription start site region 4511	900 bp upstream
Tssr126967	transcription start site region 126967	932 bp upstream
Tssr126968	transcription start site region 126968	1017 bp upstream
Tssr130069	transcription start site region 130069	669 bp downstream
Tssr130070	transcription start site region 130070	695 bp downstream