rs49532478 SNP Detail

Summary

• ID
  rs49532478
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117939341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAGCAGA TCTTTGTCAG
  CCCACACGCT GAGGTTCCCA CAGCTCAAAG CTTCCTCCCT CTCGGTCGGC TTCCTGCGCC
  GCCCAGCCTA AGAAAGGGCG TGGTCACAGA GAAGCGGAGC ATCTCTCCTC CGCCAGCCAG
  GCGCTCTGCT CACTTGCTAG GGGTGGAGGC TGTGTTGCCT TGTGAACCGC TGTCCACATT
  K
  CCCAATAGAA CAACAAACAC GGGCCAGGGC ACAGGGGCGG CAGGCCCTGC ATCCTGCGTC
  CTTTCCTCAC AGGGCGGAGT CATTTCAGCT CCTGAGATTC CTTCATACAG CCTTGCTGGG
  CGTGAGCCCA GCAGAAGGGG AAAGACTGTT GTGAAATTGT GGGAGGACAC AGCATCTCTG
  TTGGTGACAA GGGACAATTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52223842	NES15336063	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49532478					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52223842	NES15336063	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117939341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2246	CpG island 2246	within coordinates
Gm66186	predicted gene, 66186	within coordinates
Rr369079	regulatory region 369079	within coordinates
Tssr3367	transcription start site region 3367	1466 bp downstream
Tssr99497	transcription start site region 99497	154 bp upstream