rs49534502 SNP Detail

Summary

• ID
  rs49534502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122342459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTGGAA AGCTTCGCCC
  CGCCCCCGCC CACCCCGCCC CCTCCCGCCA TCAGGTAACC TAGGGAACCG CAGGTGAGGC
  GTTACCCAGA AGAGGCCGGA TCCGGAAGTA GGGGTCGCCC CGCCCACCAG CCAAGAAGCG
  GCCCAGCACG GTGACGTGTC GTTGTAGGAG TTGGCTTTAC TCGCCGTGCG TACACCCAGT
  Y
  GGAGCTCTGA GCGAGTCAGC TGTCTGGAAT CCCGATGTCG TTTTCATTCT CAAAGACTCC
  AGTTGTCCGG GTTTTTAATT TACTTTACCC AGAGTGTTGA GGCTGTCAGG TCTCGGGGCA
  GGAAGCACCA GGTCACCGTG GGTTCATCAC TGAGTATCCC AGGCCATCCT GGGAAGTGAT
  TCTCGGTCTT AAGCTTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss52524591	NES15585930	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49534502					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52524591	NES15585930	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122342459 () rs orientation: forward

Symbol	Name	Function Class
A330035P11Rik	RIKEN cDNA A330035P11 gene	within coordinates
Cpgi6887	CpG island 6887	within coordinates
Cpgi6888	CpG island 6888	1699 bp proximal
Gm56752	predicted gene, 56752	within coordinates
Rr296792	regulatory region 296792	within coordinates
Rr404313	regulatory region 404313	within coordinates
Tm9sf2	transmembrane 9 superfamily member 2	1991 bp upstream
Tssr127313	transcription start site region 127313	17 bp downstream
Tssr127314	transcription start site region 127314	76 bp upstream
Tssr127315	transcription start site region 127315	1982 bp upstream
Tssr130316	transcription start site region 130316	787 bp downstream
Tssr130317	transcription start site region 130317	1869 bp downstream
Tssr130318	transcription start site region 130318	1893 bp downstream