rs49534685 SNP Detail

Summary

• ID
  rs49534685
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGAAAAA ATATATAGCC
  AGCGCGATCT TAAGCTTATG AAATACGTGA TCTTTATAAA ATAAGGGAGG AACCGAACAA
  TACTGGGGGA GGGGAGCGGT GTGTGTGTAT GTCTTTCCTC TCCTATTCTT GCAAACTTTT
  CATCCAATCG GAAACTAGAA GGATGCCGCT TGTGCATTCT GGCTCACTAG CCGACATCCC
  K
  GTCCCCCGCC GTCACATGCT GTTATTGAAC TTGGGAAATA TCCCAGTCCG GAGTGCACAA
  GCCTCTTCCA GACCCACCTC CCGGCCGTAG CCGGGTCACA GGAAAGCCCA GCGTCGTTGT
  GATCCGGGAT TTTCCAATTT TCCCAGAGGA TTCGCATCCG GTTGCTGGGA GAGGCTCCGT
  GGGGGGTCCG CGGCCAGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135871359	ENSMUSSNP6402139	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss320956923	CHEV_3_127493482	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49534685					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	436 bp distal
Cpgi13801	CpG island 13801	74 bp proximal
Gm56817	predicted gene, 56817	307 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	642 bp distal
Rr584861	regulatory region 584861	745 bp distal
Rr584862	regulatory region 584862	318 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	251 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1362 bp downstream
Tssr31595	transcription start site region 31595	1350 bp downstream
Tssr31596	transcription start site region 31596	1317 bp downstream
Tssr31597	transcription start site region 31597	1277 bp downstream
Tssr31598	transcription start site region 31598	1254 bp downstream
Tssr31599	transcription start site region 31599	755 bp downstream
Tssr31600	transcription start site region 31600	687 bp downstream
Tssr31601	transcription start site region 31601	635 bp downstream
Tssr31602	transcription start site region 31602	581 bp downstream
Tssr31603	transcription start site region 31603	563 bp downstream
Tssr31604	transcription start site region 31604	439 bp downstream
Tssr31605	transcription start site region 31605	38 bp upstream
Tssr31606	transcription start site region 31606	236 bp upstream
Tssr31607	transcription start site region 31607	474 bp upstream
Tssr31608	transcription start site region 31608	542 bp upstream
Tssr31609	transcription start site region 31609	593 bp upstream
Tssr31610	transcription start site region 31610	702 bp upstream
Tssr31611	transcription start site region 31611	810 bp upstream
Tssr35598	transcription start site region 35598	806 bp upstream
Tssr35599	transcription start site region 35599	724 bp upstream
Tssr35600	transcription start site region 35600	696 bp upstream
Tssr35601	transcription start site region 35601	663 bp upstream
Tssr35602	transcription start site region 35602	346 bp upstream