rs49534842 SNP Detail

Summary

• ID
  rs49534842
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100854162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAT GGGGAGGCAG CAGTGAGGTC
  S
  GCCCCCTGCA GCCCTGAGAG TTCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137997080	ENSMUSSNP423557	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
ss324138821	CHEV_12_102126113	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49534842					SNP	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100854162 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	168 bp upstream
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	within coordinates
Rr471363	regulatory region 471363	within coordinates
Tssr117330	transcription start site region 117330	39 bp upstream
Tssr117331	transcription start site region 117331	16 bp upstream
Tssr117332	transcription start site region 117332	2 bp upstream
Tssr117333	transcription start site region 117333	22 bp downstream
Tssr117334	transcription start site region 117334	48 bp downstream
Tssr117335	transcription start site region 117335	123 bp downstream
Tssr117336	transcription start site region 117336	170 bp downstream