rs49535328 SNP Detail

Summary

• ID
  rs49535328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45432487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATATGTCC TAAACACACA GTTGAATGGT CCACAGGTGT
  GGTCTAGATG CCCATGTCAG AGCTCTGGGC AGGCACACGT GTACTGGGAC AAAGAAGTTT
  Y
  CTGGTCCTAG GGTTTGGATT CTGAACACAG CCTCAAGAAA ATTCTTAGCA TGTTCTCTTC
  AGGAGGTGCA CTCTGCTGGC TCTACCTTAC TCCATCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	FVB/NJ	PWD/PhJ
ss61002956	NES16124315	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	FVB/NJ	PWD/PhJ
rs49535328					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002956	NES16124315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45432487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19088	CpG island 19088	432 bp proximal
Lmtk3	lemur tyrosine kinase 3	675 bp upstream
Rr646575	regulatory region 646575	185 bp proximal
Rr646576	regulatory region 646576	895 bp proximal
Rr646577	regulatory region 646577	1596 bp proximal
Tssr66636	transcription start site region 66636	623 bp upstream
Tssr66637	transcription start site region 66637	820 bp upstream
Tssr72472	transcription start site region 72472	1963 bp downstream