rs49535412 SNP Detail

Summary

• ID
  rs49535412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121746759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGATTTTT GGGAGGCAGA
  AGAGAGAATT CATAAAAAGC TCTTAGGACA GTGTCTGGCT CAGGTTAGCA TTCTCTATTT
  GTCATTGCTT GTTGTAAAGC TTTATCACAT ACTTTGCTCC TTCCCATGGT GCCCATGGCA
  ACTGTGCATC CTTTCCTGGG GTTTCTTGCC TTTTGGTTTT AAAGCTGCCT TCAGATGATA
  Y
  AGAGTCTTGC TGAGTCATGT TTACCTCTAG CTGGTGAACA ATTGCTGGGT GGCTATCCAA
  GGTGTCTGGT GAAGCTTTAG GCTTGAGGGA AGCTGAGCAT CTGTCAGGGT GATAACTCCA
  GCAGTGGATG TGGTGTGAGT GAATCTATCT GTGGGGCCTC AGAGAACCCC CGAGACTGGG
  AACGCTTCAA GAGGCTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss61238802	NES16858637	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs49535412					SNP	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61238802	NES16858637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121746759 () rs orientation: forward

Symbol	Name	Function Class
Cyp8b1	cytochrome P450, family 8, subfamily b, polypeptide 1	1388 bp upstream
Rr384022	regulatory region 384022	925 bp upstream
Tssr92084	transcription start site region 92084	1378 bp upstream