rs49535519 SNP Detail

Summary

• ID
  rs49535519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76376201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATT TCCTGACTTA ACCCCATAAC
  R
  CTGATGAAAA GGATTTTTCT ATTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147533123	ENSMUSSNP1203664	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss325699776	CHEV_18_76402784	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49535519					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76376201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	492 bp distal
Rr540992	regulatory region 540992	1419 bp distal
Rr540993	regulatory region 540993	331 bp distal
Smad2	SMAD family member 2	within coordinates
Tssr151989	transcription start site region 151989	1816 bp downstream
Tssr151990	transcription start site region 151990	1768 bp downstream
Tssr151991	transcription start site region 151991	1666 bp downstream
Tssr151992	transcription start site region 151992	1389 bp downstream
Tssr151993	transcription start site region 151993	1171 bp downstream
Tssr151994	transcription start site region 151994	970 bp downstream