rs49535551 SNP Detail

Summary

• ID
  rs49535551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141147981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG GCATGGGCTG AGCGCTTCCC
  Y
  AGGCTTCTGC CTCCTGCCCA GCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147735918	ENSMUSSNP139682	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49535551					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141147981 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15226	CpG island 15226	992 bp distal
Cpgi15227	CpG island 15227	964 bp proximal
Gm70184	predicted gene, 70184	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	109 bp upstream
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	433 bp downstream
Tssr40053	transcription start site region 40053	87 bp upstream
Tssr40054	transcription start site region 40054	989 bp upstream
Tssr40055	transcription start site region 40055	1017 bp upstream
Tssr40056	transcription start site region 40056	1024 bp upstream
Tssr40057	transcription start site region 40057	1080 bp upstream
Tssr40058	transcription start site region 40058	1115 bp upstream
Tssr40059	transcription start site region 40059	1138 bp upstream
Tssr40060	transcription start site region 40060	1171 bp upstream
Tssr40061	transcription start site region 40061	1214 bp upstream
Tssr40062	transcription start site region 40062	1838 bp upstream
Tssr44314	transcription start site region 44314	1953 bp downstream