rs49535618 SNP Detail

Summary

• ID
  rs49535618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70991090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGCATGTG GAGCAGTGGC TGCAGTTTTC AGGGTGCTCA
  CTCCAGCCTA CACTGAGCTG AGATGCCCCA GAGTGGCTCT TTATAAGCCT GAATGAAGTG
  Y
  CATACATCTC AGAAAGGACA GGGCGGAATC AAGATGAACT GATCTGTGTA TGCATATCCC
  TCTCTCTCTC TCTCTGCTCC CTCCCTTTCT CTCTCAGTCG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52651843	NES15472024	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49535618					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651843	NES15472024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70991090 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	1160 bp upstream
Cpgi5821	CpG island 5821	1131 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482303	regulatory region 482303	1228 bp distal
Rr482304	regulatory region 482304	670 bp distal
Tssr123158	transcription start site region 123158	1255 bp upstream
Tssr123159	transcription start site region 123159	1217 bp upstream
Tssr123160	transcription start site region 123160	1188 bp upstream
Tssr123161	transcription start site region 123161	1161 bp upstream