rs49536572 SNP Detail

Summary

• ID
  rs49536572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136886996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG AACTCCTCAG CAGCAACCCT
  R
  GATCAAGTAC GTAGCAACAG GGTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147596846	ENSMUSSNP3447347	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321361817	CHEV_4_136715600	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49536572					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136886996 () rs orientation: forward

Symbol	Name	Function Class
Gm13003	predicted gene 13003	within coordinates
Gm69004	predicted gene, 69004	566 bp upstream
Rr92604	regulatory region 92604	1195 bp distal
Rr92605	regulatory region 92605	805 bp proximal
Rr96753	regulatory region 96753	within coordinates
Rr96754	regulatory region 96754	358 bp proximal