rs49536828 SNP Detail

Summary

• ID
  rs49536828
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79417185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTA ATAATTAATT CAGAGTTCCC
  W
  TAAGGTGAAT ATCAAAGAAA GAAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144776209	ENSMUSSNP2455037	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319807658	CHEV_1_79436043	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49536828					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79417185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi462	CpG island 462	515 bp proximal
Rr17631	regulatory region 17631	416 bp proximal
Rr29696	regulatory region 29696	184 bp distal
Rr29697	regulatory region 29697	15 bp proximal
Scg2	secretogranin II	within coordinates
Tssr12435	transcription start site region 12435	535 bp downstream
Tssr12436	transcription start site region 12436	547 bp downstream
Tssr12437	transcription start site region 12437	571 bp downstream
Tssr12438	transcription start site region 12438	635 bp downstream