rs49537152 SNP Detail

Summary

• ID
  rs49537152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96803926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCTAAAC TTTTACAGCC AGCCAAGACT GGAAAGTCAG
  TAGAAGTAGA TGCTGGGTAA AATGAAACAT GTATGTATCA TACAGAAAGA CCCCCAAGGA
  R
  TGAAGATACA GCTCATTGCA GGGCCCTCTG TTCAAAAAAC CCCCAAAACT ACGACTTCTT
  GTCTGACAAG AGGATTCAAC AGAATAAATA GCAAGATCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145024517	ENSMUSSNP1254005	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324494678	CHEV_13_97437373	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49537152					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96803926 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	525 bp distal
Rr281795	regulatory region 281795	within coordinates
Rr285481	regulatory region 285481	1726 bp distal
Tssr123569	transcription start site region 123569	691 bp upstream