rs49538263 SNP Detail

Summary

• ID
  rs49538263
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56301228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCGTTGC CATTAACTCC
  TAGCTCCAGC ATTTCTCTGT GTGACAGTCT CATGTCAAGG CCAAAAAGGT AAAACAGAAA
  CAGCCATTTT GTATCTCTCC AGGAGCTACG CACTACACAG CAGTGCACTG TAGTTCTTGC
  TTTCTCAATA CAAGGTGCTT TTAGATGAGG GCCCCCAGCA AAGTAACGTC CGGAAGAAGC
  K
  GGGGTGCTTG AAATGAACCC ATTTGCTTAA CAAAATCTGA GGGATCAAGT TATTTCTTCT
  CCCACACCAT CTCGATGTGC ATCTGTTAAT ATAATATCAT GAGCTTTGAC TGGAGTGTTG
  TAGCTCATGC TAGAGCATCC CGACAGTCCA GGATGGCCTA GGGTTTCCTT GGACCATTGA
  TGTACCTGCT CTACAAATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52437171	NES15406605	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49538263					SNP	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52437171	NES15406605	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56301228 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	within coordinates
Gm25917	predicted gene, 25917	1999 bp upstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	1828 bp distal
Rr267727	regulatory region 267727	1028 bp distal
Rr267728	regulatory region 267728	within coordinates
Rr269550	regulatory region 269550	1714 bp proximal
Tssr113509	transcription start site region 113509	1281 bp downstream
Tssr113510	transcription start site region 113510	1231 bp downstream
Tssr113511	transcription start site region 113511	1195 bp downstream
Tssr113512	transcription start site region 113512	1182 bp downstream