rs49538763 SNP Detail

Summary

• ID
  rs49538763
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:120273054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCACTGG ATGGGTTGTT
  CCGAGGTATT ATTCTCCAGT TTTCCACTTC ACTGCTTTTC AGAGCACTTG AAATAAATGA
  GTTTCTAGCT TTGGCTGTGA AGTATCCGTT GAAAGCCACA ATATATTCTG AAATCAATGC
  CCACAGTAAA AGTAAGTACT TATATACATA ACAGAGTATA CCTACTCTGA ACCTCCATTG
  R
  GAAAAGAACA ATGCACCCCA GAGCTCATGG CAAAGTAAGA GCAAGAAGAG AGATGAGTAT
  GAACGACCAC AGGTGGCAAC ATGCAGAGAT TCACACGAAT CTCAAATCAC ACAAAATATG
  CACTTCAAAG GCAGAGACCT GTGCTTTTGT TGTTGTTTTT TGTTTGCTTT TGAGTAAGTG
  TAGGTCTGGT GAGATGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60669537	NES16248926	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49538763					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60669537	NES16248926	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:120273054 () rs orientation: forward

Symbol	Name	Function Class
Mbtps1	membrane-bound transcription factor peptidase, site 1	within coordinates
Rr382729	regulatory region 382729	232 bp upstream
Rr671157	regulatory region 671157	770 bp proximal
Tssr83126	transcription start site region 83126	1232 bp upstream