rs49539055 SNP Detail

Summary

• ID
  rs49539055
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48653840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTACCTT CAGCAACACT
  GTCTTTTCCT CACCTTCCTT GAGCAGATGG CTGGGGTGTG GGGGCAGGGT GGCATGGAGG
  GGGAACTATT ATGGAGGCTG GAGTCCTGGT ACACTCCAGT GTCCTGCTTT GACTCTGCTT
  TTCTCCCCCA CTGGCTCATT CGTGTTCTTC ACACATCCTC CCCGAGATTA ATATCCACCT
  W
  TAGGAAGGGT AACAGGGGCA GCTGGAATTA GTCACTGAAG GAGCTGTGAG GGTGGCACTA
  GTTGTGAGGT AGGGGACTCG TTAAGACACT GCCAAGAGCC CTTAAACACT CAAGAAGCAC
  TTAAACCATA AGTGGAGGGG CAGAATGGGA GAGAAGAGAG AAAGACAGAC TAGGATTTGC
  ATCTTCCTGG AGGTCCTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62767958	NES17350407	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	T	A	A	A	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49539055					SNP	T	A	A	A	T	A	A	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62767958	NES17350407	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48653840 () rs orientation: forward

Symbol	Name	Function Class
Gm65373	predicted gene, 65373	1593 bp downstream
Rr335233	regulatory region 335233	640 bp distal
Rr335234	regulatory region 335234	within coordinates
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	395 bp downstream
Tssr145094	transcription start site region 145094	367 bp downstream
Tssr145095	transcription start site region 145095	319 bp downstream
Tssr145096	transcription start site region 145096	286 bp downstream
Tssr145097	transcription start site region 145097	689 bp upstream
Tssr145098	transcription start site region 145098	1016 bp upstream
Tssr145099	transcription start site region 145099	1668 bp upstream
Tssr145100	transcription start site region 145100	1697 bp upstream
Tssr145101	transcription start site region 145101	1734 bp upstream
Tssr145102	transcription start site region 145102	1833 bp upstream
Tssr148525	transcription start site region 148525	1878 bp downstream