rs49540008 SNP Detail

Summary

• ID
  rs49540008
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109738508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTATAGA TGTTAACCTT
  TGCTAGATGG GAAAGGGCAG ATGCTGCTGA GGTAAAGGGC CTCCAGACTC ACTGAGGAGT
  TTCTGAAAGA CACTATGACT CTTATCTCAG TGTCATATAT TGTTCAGCAT ATAGACTACA
  GCAAGCAAGC CTTCGGAGCT GTTTCCAACA GAGGCACAAT CTCATATGCG TACACTGACC
  K
  TCCTGAAGAA CACCCAAAAC ACTATGCTTA TATTTGAAAA ATGCACAAGG TAAGTGCTAT
  TCCAAAAATA GTTGCCCCAG CAAACTCTAT TGCTTAAAAC TTGCAATTAA GTTTACTGAC
  AGAAAGCCCA GTGTACAGAA TTACATACTA TAGGAACAGC AGAACAAACA GGAGAAGAAG
  AGAAAAACTA GGTCAGAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458386	CHEV_10_109339703	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49540008					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109738508 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr224236	regulatory region 224236	1092 bp proximal
Tssr99236	transcription start site region 99236	1167 bp downstream
Tssr99237	transcription start site region 99237	1183 bp downstream
Tssr99238	transcription start site region 99238	1205 bp downstream
Tssr99239	transcription start site region 99239	1228 bp downstream
Tssr99240	transcription start site region 99240	1264 bp downstream
Tssr99241	transcription start site region 99241	1305 bp downstream
Tssr99242	transcription start site region 99242	1365 bp downstream