rs49540417 SNP Detail

Summary

• ID
  rs49540417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117660365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCC ATCCTGGAGT AGGCTGGATG
  R
  TAGAAGAGCT CCTGAGAGGA GGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135694703	ENSMUSSNP3633134	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320900604	CHEV_3_117569634	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49540417					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117660365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13747	CpG island 13747	1784 bp proximal
Rr583873	regulatory region 583873	650 bp distal
Rr583874	regulatory region 583874	182 bp proximal
Snx7	sorting nexin 7	Intron