rs49540610 SNP Detail

Summary

• ID
  rs49540610
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40369315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT CAGAGTCTCT CTTGCTCAAG
  R
  AAAACAGGGC ATTACCAGTT ATTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136330475	ENSMUSSNP6214551	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49540610					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40369315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	1652 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676840	regulatory region 676840	1765 bp distal
Rr676842	regulatory region 676842	662 bp proximal
Rr676843	regulatory region 676843	1033 bp proximal
Tssr84451	transcription start site region 84451	361 bp downstream
Tssr84452	transcription start site region 84452	306 bp downstream
Tssr84453	transcription start site region 84453	405 bp upstream
Tssr88941	transcription start site region 88941	1886 bp upstream
Tssr88942	transcription start site region 88942	1871 bp upstream
Tssr88943	transcription start site region 88943	1843 bp upstream
Tssr88944	transcription start site region 88944	1795 bp upstream
Tssr88945	transcription start site region 88945	1778 bp upstream
Tssr88946	transcription start site region 88946	1682 bp upstream
Tssr88947	transcription start site region 88947	1653 bp upstream
Tssr88948	transcription start site region 88948	1623 bp upstream
Tssr88949	transcription start site region 88949	534 bp upstream