rs49540677 SNP Detail

Summary

• ID
  rs49540677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:124673705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTT TCTTATACAC TCCAGGGCCA
  Y
  TTGCCAATGG GTGGCACTGC CCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145836416	ENSMUSSNP2881421	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49540677					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124673705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	1776 bp proximal
Gm45890	predicted gene 45890	1824 bp upstream
Nup133	nucleoporin 133	Intron
Rr672577	regulatory region 672577	1734 bp proximal