rs49540722 SNP Detail

Summary

• ID
  rs49540722
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAAGAGC AGATTTGGTT
  CTGGGTCCTG AACTGCTGAC CAAGTATTAC CAAGTACTAT CAAGTACTAC AAAGTATTAC
  CAAACAGTAT CACCCTTCAC ATTGGTGGCC ACAGAAAGGG CTTTGGGACA ACCTTTTCTG
  GCCAGCTGCA CAACTGCCCT TCTGAGACTG ATAGGGTTTT GATGGCCGGG CTCCCAAACA
  S
  TGCCTTTAAT GTTAGGCTGG AACATTTTCT CCAGCGGCTC AGCTCCATGC AGCCCTGCTG
  CAGAGTGGAA TGTCAGGAGC TGACAGTATC CATAACTTGG CTGAGTTATA AAGTGAACTC
  ACGTCTAGCA AACTCACCAT GTAAAAGTGC AGTGATTATA ACACATCAAA GAGATACTAA
  CACAGAGTCT TAGGCCACGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328602	NES15372083	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49540722					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328602	NES15372083	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492557 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	1445 bp distal
Rr464136	regulatory region 464136	1564 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	188 bp downstream
Tssr112998	transcription start site region 112998	1183 bp upstream
Tssr112999	transcription start site region 112999	1230 bp upstream
Tssr113000	transcription start site region 113000	1354 bp upstream
Tssr113001	transcription start site region 113001	1828 bp upstream
Tssr113002	transcription start site region 113002	1852 bp upstream
Tssr113003	transcription start site region 113003	1927 bp upstream
Tssr113004	transcription start site region 113004	1987 bp upstream
Tssr115902	transcription start site region 115902	299 bp downstream
Tssr115903	transcription start site region 115903	631 bp downstream
Tssr115904	transcription start site region 115904	648 bp downstream
Tssr115905	transcription start site region 115905	953 bp downstream
Tssr115906	transcription start site region 115906	1081 bp downstream
Tssr115907	transcription start site region 115907	1136 bp downstream
Tssr115908	transcription start site region 115908	1176 bp downstream
Tssr115909	transcription start site region 115909	1262 bp downstream
Tssr115910	transcription start site region 115910	1314 bp downstream
Tssr115911	transcription start site region 115911	1364 bp downstream
Tssr115912	transcription start site region 115912	1378 bp downstream
Tssr115913	transcription start site region 115913	1413 bp downstream
Tssr115914	transcription start site region 115914	1465 bp downstream
Tssr115915	transcription start site region 115915	1494 bp downstream
Tssr115916	transcription start site region 115916	1551 bp downstream
Tssr115917	transcription start site region 115917	1597 bp downstream
Tssr115918	transcription start site region 115918	1616 bp downstream
Tssr115919	transcription start site region 115919	1643 bp downstream
Tssr115920	transcription start site region 115920	1670 bp downstream
Tssr115921	transcription start site region 115921	1975 bp downstream