rs49541002 SNP Detail

Summary

• ID
  rs49541002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99141718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATACCCT GCCCTGCCCA
  GCCCAGCCTC AGGAGTGGAC AGATTCTCAG CTGATGGCTC AGCTACTTTT ATCTCTCTGC
  CATCTTGTGG CTTAGAGCTC TTTGGGCATC CCCAAGGATA ATTGATGTTG CTGGGTGTGA
  TATCTATGTT GGGTGACTGT TGACATTGGG TCTCATCTCT TTGATTTTCC TTGCCTTTGT
  Y
  GCCTTCTTCT CCATGCTGTC TTTGGTGAAG AGAGCCCTGT AGAATCATGG TCTATAACAC
  CATAAATAGT CTGTCTTACT GCTCTGGCTT GCTCTCCTGC ACCCTGAGTA TTAACAACCT
  CCCCCACTTC TCTCCACAGG AGGATTTGAA ATACTATGGT TGATACTCAT AGGATCTTCT
  TGTGTGGGAA ACTTTACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61445193	NES16826074	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	C	T	T		T
ss323135184	CHEV_9_99160084	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49541002					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61445193	NES16826074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99141718 () rs orientation: forward

Symbol	Name	Function Class
Cep70	centrosomal protein 70	within coordinates
Gm18914	predicted gene, 18914	1280 bp downstream
Gm47199	predicted gene, 47199	within coordinates
Rr383815	regulatory region 383815	1915 bp downstream