rs49541032 SNP Detail

Summary

• ID
  rs49541032
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25757667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCTCAT TTGAAGGAAA
  TAGTCTCAGG CTCCTTATAT TAAAGAGTTT CATTAGTCGC CATCACAGAA TGTCAAGTGC
  GATTGTTCAT TGTGCTCGTG TTCTGGTTTT AAACACAACG TGTGGGTTCC GCACAGCGTA
  ACCTCTTGAA CTGCAGCAAA ACCAGCTCTG CTCCCATCTT CAGCAGGAGA GGATGGCCAG
  K
  TAGACACAGT AGGAATGTCC GTAATTCAAA ACACTAAAAT CTAAAACGCT CCAGCATCTG
  AAACTTTTTG AGAACTAATC TGATGCTAAC AGGAAATTCT TTCTGTTGGC CCACTGTACA
  TACACTTCAT TCACAATATA GCACACACAT GGCTTTCACA ATATAGCACA CACATTACCT
  TCAGGTTATG TGTATTAGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52193840	NES15225008	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49541032					SNP	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52193840	NES15225008	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25757667 () rs orientation: forward

Symbol	Name	Function Class
Gm47930	predicted gene, 47930	1904 bp upstream
Gm66740	predicted gene, 66740	within coordinates
Rr218979	regulatory region 218979	1134 bp proximal
Rr218980	regulatory region 218980	1534 bp proximal