rs49541087 SNP Detail

Summary

• ID
  rs49541087
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73189677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGAACAC ATCCAGAAAT
  GCATTCACAT TTTTAAATTA ACATAAAGAT ACAGTCATAC AACAAAAAAT ATCTTATATG
  CTTTATTACT TCAGCCACTG ATAAGCTACT TCAAAGAATG AAGGAGAAAT CATGATTTAA
  ACAAACAGCA CATTAAAAAG CTTCAGAAGA GAAAGCATTA CAGGACACTG TCAAAATAAA
  K
  GGATACATTT AAAGCAGCAC CAACTAAAAC ATAAGGATAA AATAAAATAC AATTATTATC
  AACCAGAAAG AACTGTCTTA ATATACACAA ACATAAACCT TGTAATATTT TAAGCATAAA
  AAATACAATT ACATTGCCAT AGTAACAAAC ACAAAGCTTA AGTATTAATA GCATTCCAAA
  ATTTTTGTGG TTACAGATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61020020	NES16105295	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49541087					SNP	T	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020020	NES16105295	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73189677 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	within coordinates
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	1771 bp distal
Gm44686	predicted gene 44686	within coordinates
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	1215 bp downstream
Rr380951	regulatory region 380951	1383 bp upstream
Tssr67202	transcription start site region 67202	1959 bp downstream
Tssr67203	transcription start site region 67203	1871 bp downstream
Tssr67204	transcription start site region 67204	1837 bp downstream
Tssr67205	transcription start site region 67205	551 bp downstream
Tssr72948	transcription start site region 72948	656 bp upstream
Tssr72949	transcription start site region 72949	959 bp downstream
Tssr72950	transcription start site region 72950	1156 bp downstream
Tssr72951	transcription start site region 72951	1496 bp downstream
Tssr72952	transcription start site region 72952	1567 bp downstream
Tssr72953	transcription start site region 72953	1790 bp downstream
Tssr72954	transcription start site region 72954	1809 bp downstream
Tssr72955	transcription start site region 72955	1894 bp downstream