rs49542858 SNP Detail

Summary

• ID
  rs49542858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161575553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC CACTGCCAGG GAGGTAGAAC
  R
  AATTGTTCAA CAACAGCAAC ATGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145921200	ENSMUSSNP2237053	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49542858					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161575553 () rs orientation: forward

Symbol	Name	Function Class
Gm5049	predicted gene 5049	339 bp downstream
Gm70711	predicted gene, 70711	381 bp upstream
Rr396465	regulatory region 396465	240 bp upstream
Rr421832	regulatory region 421832	198 bp proximal
Rr421833	regulatory region 421833	782 bp proximal
Tssr9696	transcription start site region 9696	433 bp downstream