rs49543305 SNP Detail

Summary

• ID
  rs49543305
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32519982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGAATCAC AAGGACAGGT AAGATACTGT GGTGGTTGGT
  CTGAGTTACA ATGGCCCCCG TAGGCTTATA TATCTGAATG CTTAGTAGTC ACAGAGTGAT
  R
  CTATTTGAGA AGAATTAAGA CATATAACCT TCTAGAAGAC AGTGTTTCAC TACGATATCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTTTGCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148847861	ENSMUSSNP1310083	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324311960	CHEV_13_32427868	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49543305					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32519982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5422	CpG island 5422	1949 bp proximal
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates