rs49543768 SNP Detail

Summary

• ID
  rs49543768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:34725746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTGAGT TTTAATATCT
  TGATGCTCCA CACCCTTTGA CTTTCTCACT TCATTTTCAT TTGTAGACCG TTATTTCTGA
  TGGAGCTAGA CCAGACTTTA AAGGACTGAA CTGTTTTAAG ATAAACAACA ATGATCCATC
  AAGCAGATAT AATCACCACT GAGTTCTTCA TTAAATGAAG CAAATTCCAT TTCTTCTATC
  R
  TTCTCAGATT CTTCAACTCA GGAGTCAGGA AGATAACCTC TATCGTTGGC CAGTCATGAC
  TAGTTAATAC CTGTAACTAA AATCTTTATG AATTCCTTGT TTTGTTCTTT GATTCAGAGA
  GAACATATTA AATCACATAC TATCTCTCAG GTGCAGTGAC ATAGACCTTG GAAGGATGTG
  TGATTAAACG TACTATCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63335187	NES17512758	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49543768					SNP	A	A	A	A	G	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63335187	NES17512758	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34725746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	904 bp distal
Gm57348	predicted gene, 57348	within coordinates
Rr402479	regulatory region 402479	1113 bp downstream
Rr444978	regulatory region 444978	1289 bp distal
Rr444979	regulatory region 444979	1205 bp distal
Rr444980	regulatory region 444980	586 bp distal
Rr444981	regulatory region 444981	899 bp proximal
Rr444982	regulatory region 444982	1303 bp proximal
Rr444983	regulatory region 444983	1546 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	1278 bp upstream
Tssr100930	transcription start site region 100930	1147 bp downstream
Tssr100931	transcription start site region 100931	1128 bp downstream
Tssr107398	transcription start site region 107398	1323 bp upstream
Tssr107399	transcription start site region 107399	1293 bp upstream
Tssr107400	transcription start site region 107400	1256 bp upstream