rs49543824 SNP Detail

Summary

• ID
  rs49543824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31182718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGATAGT TCAGTTCTCA
  AGCGATCCTC TCACCTTAGC CTGTCAAGCA GCTGGAAACC ATCCACCCTC ACTTAGCATA
  GCAGCTTTGA TCACAGAAGG TAGTTATCTG CTAAATTTCT CACTGTGAAG CCACTCCTTT
  TCCTTTTATA GCTAAGAAGT ATCTTTTATG AGGTTAGGGC TCAGCTCAGC GTTAGAGAGC
  M
  TGCCTACCGA GCTGGGGTTC TTGGTTCTGA TGCCAGCCTC CCACAAGAAA GGTGAGTATC
  TTCTTGTGGT GGACTTGATG CTGAATGTGT TGGTACAGAA GTGTCAGCAT TTTACCCCAT
  GGTGTTAGCA TCCACTGATA CTGTTTGAAA AAAACCTTTG CTTTGTTCTT TTGATATGAA
  AGGGTCTTGC TGTATAGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61369403	NES16744353	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49543824					SNP	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61369403	NES16744353	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31182718 () rs orientation: forward

Symbol	Name	Function Class
Gm51733	predicted gene, 51733	417 bp upstream
Gm69959	predicted gene, 69959	within coordinates
Rr194404	regulatory region 194404	718 bp distal
Rr208622	regulatory region 208622	within coordinates